All modules for which code is available
- pymaftools.core.CancerCellFractionTable
- pymaftools.core.Clustering
- pymaftools.core.Cohort
- pymaftools.core.CopyNumberVariationTable
- pymaftools.core.ExpressionTable
- pymaftools.core.MAF
- pymaftools.core.PairwiseMatrix
- pymaftools.core.PivotTable
- pymaftools.core.SignatureTable
- pymaftools.core.VCF
- pymaftools.io.tcga.base
- pymaftools.io.tcga.client
- pymaftools.io.tcga.clinical
- pymaftools.io.tcga.cnv_gene
- pymaftools.io.tcga.cnv_segment
- pymaftools.io.tcga.expression
- pymaftools.io.tcga.mapping
- pymaftools.io.tcga.methylation
- pymaftools.io.tcga.mutation
- pymaftools.io.vcf.parsers
- pymaftools.io.vcf.record
- pymaftools.model.StackingModel
- pymaftools.model.modelUtils
- pymaftools.plot.BasePlot
- pymaftools.plot.ColorManager
- pymaftools.plot.CopyNumberVariationTablePlot
- pymaftools.plot.ExpressionTablePlot
- pymaftools.plot.FontManager
- pymaftools.plot.LegendManager
- pymaftools.plot.LollipopPlot
- pymaftools.plot.MethodsPlot
- pymaftools.plot.ModelPlot
- pymaftools.plot.OncoPlot
- pymaftools.plot.PivotStatsPlot
- pymaftools.plot.SignatureTablePlot
- pymaftools.plot.SmallVariationTablePlot
- pymaftools.plot.Track
- pymaftools.utils.geneinfo
- pymaftools.utils.geneset
- pymaftools.utils.reduction