pymaftools

User Guide

  • Getting Started
  • PivotTable
  • OncoPlot

API Reference

  • Core Modules
  • Plot Modules
  • Model Modules
  • I/O Modules
  • Utility Modules
pymaftools
  • Overview: module code

All modules for which code is available

  • pymaftools.core.CancerCellFractionTable
  • pymaftools.core.Clustering
  • pymaftools.core.Cohort
  • pymaftools.core.CopyNumberVariationTable
  • pymaftools.core.ExpressionTable
  • pymaftools.core.MAF
  • pymaftools.core.PairwiseMatrix
  • pymaftools.core.PivotTable
  • pymaftools.core.SignatureTable
  • pymaftools.core.VCF
  • pymaftools.io.tcga.base
  • pymaftools.io.tcga.client
  • pymaftools.io.tcga.clinical
  • pymaftools.io.tcga.cnv_gene
  • pymaftools.io.tcga.cnv_segment
  • pymaftools.io.tcga.expression
  • pymaftools.io.tcga.mapping
  • pymaftools.io.tcga.methylation
  • pymaftools.io.tcga.mutation
  • pymaftools.io.vcf.parsers
  • pymaftools.io.vcf.record
  • pymaftools.model.StackingModel
  • pymaftools.model.modelUtils
  • pymaftools.plot.BasePlot
  • pymaftools.plot.ColorManager
  • pymaftools.plot.CopyNumberVariationTablePlot
  • pymaftools.plot.ExpressionTablePlot
  • pymaftools.plot.FontManager
  • pymaftools.plot.LegendManager
  • pymaftools.plot.LollipopPlot
  • pymaftools.plot.MethodsPlot
  • pymaftools.plot.ModelPlot
  • pymaftools.plot.OncoPlot
  • pymaftools.plot.PivotStatsPlot
  • pymaftools.plot.SignatureTablePlot
  • pymaftools.plot.SmallVariationTablePlot
  • pymaftools.plot.Track
  • pymaftools.utils.geneinfo
  • pymaftools.utils.geneset
  • pymaftools.utils.reduction

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