pymaftools

Python package for handling and analyzing Mutation Annotation Format (MAF) files.

User Guide

• Getting Started
  • Installation
  • Quick Start
  • Subsetting Data
  • Multi-omics Integration

API Reference

• Core Modules
  • MAF
  • PivotTable
  • Cohort
  • CopyNumberVariationTable
  • ExpressionTable
  • SignatureTable
  • CancerCellFractionTable
  • PairwiseMatrix
  • Clustering
• Plot Modules
  • OncoPlot
  • LollipopPlot
  • PivotTablePlot
  • ModelPlot
  • MethodsPlot
  • ColorManager
  • FontManager
  • LegendManager
• Model Modules
  • StackingModel
  • modelUtils
• Utility Modules
  • geneset
  • reduction
  • geneinfo

Indices and tables

• Index

• Module Index