PROJECT_ARCHIVES
ACCESSING_DATABASE... [8 RECORDS FOUND]
pymaftools
Python-based toolkit for analyzing and visualizing somatic mutations in MAF format, optimized for cancer WES data.
WES CNV-HRD-CCF Pipeline
Automated pipeline integrating Sequenza, scarHRD, and PyClone-VI for CNV, HRD score, and clonal architecture analysis from WES data.
Lab Website Redesign
Static lab website with terminal-inspired design, deployed using Nginx with HTTPS via Certbot.
bioinformatics-tools
A collection of custom shell scripts and utilities for streamlining common bioinformatics tasks.
Xenium Spatial RNA Cell Segmentation
In-progress tool for spatial transcriptomics cell segmentation and spatial-feature matrix preprocessing from Xenium outputs.
Terminal-Style Portfolio Website
Personal website with interactive terminal-style UI and project showcase, optimized for readability and responsiveness.
16S Microbiome Analysis & Taxonomy Refinement Pipeline
Building a full 16S microbiome analysis pipeline integrating QIIME2, DADA2, MAFFT, FastTree, and BLAST-based NCBI taxonomy refinement. The workflow covers primer trimming, quality assessment, denoising, ASV construction, taxonomic classification, phylogenetic tree generation, alpha diversity analysis, and species-level collapsing, with clean CSV outputs and custom visualizations using matplotlib. Designed for reproducible, config-driven processing of gut microbiome datasets on Linux/GCP environments.
Alzheimer's Disease Multi-Model
Developing a multi-modal AI system for Alzheimer's disease by integrating multi-plane MRI deep-learning models, radiomics features, and volume info. Built a automated MRI preprocessing pipeline, modular training framework, and fusion methods combining slice-level CNN probabilities with tabular signals for improved diagnostic performance.