Core Modules
============

MAF
---

.. automodule:: pymaftools.core.MAF
   :members:
   :show-inheritance:

PivotTable
----------

.. automodule:: pymaftools.core.PivotTable
   :members:
   :show-inheritance:

Cohort
------

.. automodule:: pymaftools.core.Cohort
   :members:
   :show-inheritance:

CopyNumberVariationTable
------------------------

.. automodule:: pymaftools.core.CopyNumberVariationTable
   :members:
   :show-inheritance:

ExpressionTable
---------------

.. automodule:: pymaftools.core.ExpressionTable
   :members:
   :show-inheritance:

SignatureTable
--------------

.. automodule:: pymaftools.core.SignatureTable
   :members:
   :show-inheritance:

CancerCellFractionTable
------------------------

.. automodule:: pymaftools.core.CancerCellFractionTable
   :members:
   :show-inheritance:

PairwiseMatrix
--------------

.. automodule:: pymaftools.core.PairwiseMatrix
   :members:
   :show-inheritance:

Clustering
----------

.. automodule:: pymaftools.core.Clustering
   :members:
   :show-inheritance: